Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | CPT03_RS19755 | Not Available | Negative | 4715021 - 4716049 | 39351.8 |
| hd domain-containing protein | CPT03_RS19760 | Not Available | Negative | 4716111 - 4716758 | 24381.1 |
| thump domain-containing class i sam-dependent rna methyltransferase | CPT03_RS19765 | Not Available | Negative | 4716763 - 4717950 | 44604.8 |
| duf3127 domain-containing protein | CPT03_RS19770 | Not Available | Positive | 4718023 - 4718388 | 13481.8 |
| sensor histidine kinase | CPT03_RS19775 | Not Available | Positive | 4718639 - 4720480 | 70061.5 |
| response regulator transcription factor | CPT03_RS19780 | Not Available | Positive | 4720492 - 4721187 | 26492.3 |
| glpgli family protein | CPT03_RS19785 | Not Available | Negative | 4721184 - 4721957 | 29065.9 |
| outer membrane beta-barrel family protein | CPT03_RS19790 | Not Available | Negative | 4721962 - 4724769 | 105014.0 |
| helix-turn-helix domain-containing protein | CPT03_RS19795 | Not Available | Positive | 4724921 - 4727215 | 86137.9 |
| diaminopimelate epimerase | CPT03_RS19800 | Not Available | Negative | 4727222 - 4728007 | 29173.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

