Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine hydrolase domain-containing protein | CPT03_RS19550 | Not Available | Negative | 4667817 - 4669046 | 46709.9 |
| class ii fumarate hydratase | CPT03_RS19560 | Not Available | Positive | 4669702 - 4671099 | 49981.1 |
| fumarate hydratase | CPT03_RS19565 | Not Available | Positive | 4671103 - 4671615 | 19650.7 |
| s1/p1 nuclease | CPT03_RS19570 | Not Available | Positive | 4671647 - 4672447 | 30387.5 |
| low molecular weight protein-tyrosine-phosphatase | CPT03_RS19575 | Not Available | Positive | 4672447 - 4672884 | 16792.1 |
| duf1543 domain-containing protein | CPT03_RS19580 | Not Available | Positive | 4672906 - 4673460 | 20913.0 |
| cyanophycin synthetase | CPT03_RS19585 | Not Available | Negative | 4673514 - 4676129 | 96562.3 |
| cyanophycinase | CPT03_RS19590 | Not Available | Positive | 4676490 - 4677365 | 31302.7 |
| isoaspartyl peptidase/l-asparaginase | CPT03_RS19595 | Not Available | Positive | 4677367 - 4678209 | 30049.6 |
| phosphocholine-specific phospholipase c | CPT03_RS19600 | Not Available | Positive | 4678350 - 4680881 | 94816.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

