Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome assembly cofactor rimp | CPT03_RS19455 | Not Available | Positive | 4644832 - 4645296 | 17129.8 |
| transcription termination factor nusa | CPT03_RS19460 | Not Available | Positive | 4645299 - 4646534 | 46798.8 |
| translation initiation factor if-2 | CPT03_RS19465 | Not Available | Positive | 4646617 - 4649658 | 109873.0 |
| gdsl-type esterase/lipase family protein | CPT03_RS19470 | Not Available | Positive | 4649756 - 4650733 | 36171.8 |
| acyltransferase family protein | CPT03_RS19475 | Not Available | Positive | 4650841 - 4651923 | 42238.6 |
| alpha-1,2-fucosyltransferase | CPT03_RS19480 | Not Available | Negative | 4651941 - 4652792 | 33123.3 |
| glycosyltransferase family 2 protein | CPT03_RS19485 | Not Available | Negative | 4652802 - 4653818 | 39093.1 |
| glycosyltransferase family 4 protein | CPT03_RS19490 | Not Available | Negative | 4653871 - 4655043 | 45179.8 |
| glycosyltransferase | CPT03_RS19495 | Not Available | Negative | 4655085 - 4656053 | 36113.2 |
| abc transporter atp-binding protein | CPT03_RS19500 | Not Available | Negative | 4656078 - 4657904 | 67601.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

