Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m20/m25/m40 family metallo-hydrolase | CPT03_RS19155 | Not Available | Negative | 4585101 - 4586414 | 48498.8 |
| duf4407 domain-containing protein | CPT03_RS19160 | Not Available | Negative | 4586420 - 4587505 | 40676.1 |
| rhodanese-like domain-containing protein | CPT03_RS19165 | Not Available | Positive | 4587654 - 4587971 | 11771.2 |
| duf6358 family protein | CPT03_RS23005 | Not Available | Positive | 4587975 - 4588163 | 7298.24 |
| dipeptide epimerase | CPT03_RS19175 | Not Available | Negative | 4588150 - 4589187 | 38414.6 |
| hypothetical protein | CPT03_RS19180 | Not Available | Positive | 4589276 - 4590244 | 37222.4 |
| rhomboid family intramembrane serine protease | CPT03_RS19185 | Not Available | Negative | 4590241 - 4590858 | 23329.0 |
| m14 family zinc carboxypeptidase | CPT03_RS19190 | Not Available | Negative | 4590861 - 4592561 | 65271.6 |
| hypothetical protein | CPT03_RS19195 | Not Available | Negative | 4592624 - 4593301 | 24907.7 |
| peptidase t | CPT03_RS19200 | Not Available | Positive | 4593369 - 4594622 | 45620.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

