Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | CPT03_RS18960 | Not Available | Positive | 4541044 - 4544262 | 116216.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | CPT03_RS18965 | Not Available | Positive | 4544274 - 4545758 | 53097.7 |
| hypothetical protein | CPT03_RS18970 | Not Available | Positive | 4545935 - 4546756 | 30496.6 |
| hypothetical protein | CPT03_RS18975 | Not Available | Positive | 4547007 - 4547555 | 20293.1 |
| s8 family serine peptidase | CPT03_RS18980 | Not Available | Positive | 4547655 - 4548758 | 37463.1 |
| s66 peptidase family protein | CPT03_RS18985 | Not Available | Negative | 4548887 - 4549750 | 31915.6 |
| methionine--trna ligase | CPT03_RS18990 | Not Available | Positive | 4549791 - 4551899 | 79636.7 |
| Trna-arg | Not Available | Not Available | Positive | 4551992 - 4552063 | Not Available |
| site-specific integrase | CPT03_RS19000 | Not Available | Positive | 4552208 - 4553473 | 49604.9 |
| hypothetical protein | CPT03_RS19005 | Not Available | Positive | 4553548 - 4554342 | 30676.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

