Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphatidate cytidylyltransferase | CPT03_RS18655 | Not Available | Positive | 4483590 - 4484399 | 30648.0 |
| duf3820 family protein | CPT03_RS18660 | Not Available | Negative | 4484594 - 4484812 | 8449.58 |
| transcription-repair coupling factor | CPT03_RS18665 | Not Available | Negative | 4484824 - 4488165 | 126820.0 |
| duf2752 domain-containing protein | CPT03_RS18670 | Not Available | Positive | 4488245 - 4488571 | 12274.6 |
| tm2 domain-containing protein | CPT03_RS18675 | Not Available | Positive | 4488564 - 4488923 | 13729.0 |
| nif3-like dinuclear metal center hexameric protein | CPT03_RS18680 | Not Available | Positive | 4489074 - 4490171 | 40908.1 |
| zinc ribbon domain-containing protein | CPT03_RS18685 | Not Available | Positive | 4490171 - 4490914 | 28625.3 |
| tetratricopeptide repeat protein | CPT03_RS18690 | Not Available | Positive | 4491119 - 4492627 | 56609.3 |
| 3-oxoacyl-acp synthase iii family protein | CPT03_RS18695 | Not Available | Negative | 4492637 - 4493719 | 39600.7 |
| lutc/ykgg family protein | CPT03_RS18700 | Not Available | Negative | 4493785 - 4494429 | 24597.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

