Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding cassette domain-containing protein | CPT03_RS18505 | Not Available | Negative | 4449146 - 4449760 | 23430.1 |
| acyl-acp--udp-n-acetylglucosamine o-acyltransferase | CPT03_RS18510 | Not Available | Negative | 4449775 - 4450560 | 28474.3 |
| bifunctional udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase/3-hydroxyacyl-acp dehydratase | CPT03_RS18515 | Not Available | Negative | 4450557 - 4451969 | 51980.4 |
| udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferase | CPT03_RS18520 | Not Available | Negative | 4451959 - 4453044 | 38854.1 |
| hd domain-containing protein | CPT03_RS18525 | Not Available | Negative | 4453166 - 4454389 | 46603.7 |
| bifunctional response regulator/alkaline phosphatase family protein | CPT03_RS18530 | Not Available | Positive | 4454494 - 4456047 | 60337.2 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | CPT03_RS18535 | Not Available | Positive | 4456050 - 4456466 | 15856.9 |
| alanine dehydrogenase | CPT03_RS18540 | Not Available | Positive | 4456534 - 4457760 | 44268.2 |
| m15 family metallopeptidase | CPT03_RS18545 | Not Available | Positive | 4457769 - 4458452 | 26396.2 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | CPT03_RS18550 | Not Available | Negative | 4458455 - 4459786 | 50156.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

