Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CPT03_RS18455 | Not Available | Negative | 4439831 - 4441000 | 42721.4 |
| aldehyde dehydrogenase family protein | CPT03_RS18460 | Not Available | Positive | 4441120 - 4442520 | 51236.2 |
| 4,5-dopa dioxygenase extradiol | CPT03_RS18465 | Not Available | Negative | 4442521 - 4443348 | 30898.3 |
| ycei family protein | CPT03_RS18470 | Not Available | Negative | 4443399 - 4443971 | 20989.0 |
| peptidylprolyl isomerase | CPT03_RS18475 | Not Available | Positive | 4444119 - 4444802 | 25637.1 |
| exodeoxyribonuclease iii | CPT03_RS18480 | Not Available | Positive | 4444819 - 4445589 | 29707.4 |
| imidazolonepropionase | CPT03_RS18485 | Not Available | Positive | 4445593 - 4446837 | 44443.8 |
| formimidoylglutamase | CPT03_RS18490 | Not Available | Positive | 4446837 - 4447805 | 35244.2 |
| 5-formyltetrahydrofolate cyclo-ligase | CPT03_RS18495 | Not Available | Negative | 4447766 - 4448344 | 22332.0 |
| elongation factor p | CPT03_RS18500 | Not Available | Negative | 4448429 - 4448989 | 21277.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

