Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crp/fnr family transcriptional regulator | CPT03_RS18405 | Not Available | Negative | 4429775 - 4430341 | 21671.4 |
| duf6249 domain-containing protein | CPT03_RS18410 | Not Available | Positive | 4430487 - 4430840 | 12816.1 |
| tetr/acrr family transcriptional regulator | CPT03_RS18415 | Not Available | Positive | 4431026 - 4431646 | 23280.5 |
| tolc family protein | CPT03_RS18420 | Not Available | Positive | 4431643 - 4432959 | 48513.1 |
| hlyd family secretion protein | CPT03_RS18425 | Not Available | Positive | 4432980 - 4434023 | 37338.7 |
| dha2 family efflux mfs transporter permease subunit | CPT03_RS18430 | Not Available | Positive | 4434026 - 4435573 | 56268.8 |
| phosphoenolpyruvate carboxylase | CPT03_RS18435 | Not Available | Positive | 4435815 - 4438403 | 98381.8 |
| duf6952 family protein | CPT03_RS18440 | Not Available | Negative | 4438462 - 4438713 | 9117.99 |
| thioredoxin family protein | CPT03_RS18445 | Not Available | Negative | 4438713 - 4439021 | 11427.8 |
| peroxiredoxin | CPT03_RS18450 | Not Available | Negative | 4439039 - 4439671 | 23444.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

