Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtp-binding protein | CPT03_RS01810 | Not Available | Positive | 457876 - 459078 | 45925.5 |
| tonb-dependent receptor | CPT03_RS01815 | Not Available | Positive | 459091 - 461193 | 79108.8 |
| hypothetical protein | CPT03_RS01820 | Not Available | Positive | 461234 - 461875 | 24164.6 |
| rna polymerase sigma-70 factor | CPT03_RS01825 | Not Available | Positive | 461988 - 462563 | 22618.7 |
| fecr family protein | CPT03_RS01830 | Not Available | Positive | 462655 - 463785 | 41530.1 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS01835 | Not Available | Positive | 464122 - 467367 | 119391.0 |
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS01840 | Not Available | Positive | 467372 - 468889 | 56465.0 |
| pkd domain-containing protein | CPT03_RS01845 | Not Available | Positive | 468918 - 469781 | 30999.6 |
| acyltransferase family protein | CPT03_RS01850 | Not Available | Positive | 469800 - 470921 | 42126.8 |
| duf4832 domain-containing protein | CPT03_RS01855 | Not Available | Positive | 470950 - 472497 | 57627.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

