Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metal-dependent hydrolase | CPT03_RS18150 | Not Available | Positive | 4382190 - 4382867 | 24760.7 |
| dna polymerase i | CPT03_RS18155 | Not Available | Negative | 4382922 - 4385735 | 104971.0 |
| hypothetical protein | CPT03_RS18160 | Not Available | Positive | 4385851 - 4386546 | 25089.3 |
| dna-3-methyladenine glycosylase i | CPT03_RS18165 | Not Available | Negative | 4386547 - 4387107 | 21292.7 |
| mgmt family protein | CPT03_RS18170 | Not Available | Negative | 4387117 - 4387443 | 11970.5 |
| trna (guanosine(46)-n7)-methyltransferase trmb | CPT03_RS18175 | Not Available | Negative | 4387470 - 4388120 | 24992.0 |
| gdp-l-fucose synthase | CPT03_RS18180 | Not Available | Positive | 4388292 - 4389221 | 34810.8 |
| hydrogen peroxide-inducible genes activator | CPT03_RS18185 | Not Available | Positive | 4389260 - 4390192 | 35424.5 |
| superoxide dismutase | CPT03_RS18190 | Not Available | Negative | 4390277 - 4390882 | 22300.3 |
| nucleoside deaminase | CPT03_RS18195 | Not Available | Negative | 4390996 - 4391469 | 17279.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

