Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf305 domain-containing protein | CPT03_RS17950 | Not Available | Positive | 4345424 - 4345876 | 17653.5 |
| 4-hydroxy-tetrahydrodipicolinate reductase | CPT03_RS17955 | Not Available | Positive | 4345958 - 4346713 | 28014.9 |
| dknyy domain-containing protein | CPT03_RS17960 | Not Available | Positive | 4346987 - 4347775 | 30482.6 |
| sigma-70 family rna polymerase sigma factor | CPT03_RS17965 | Not Available | Positive | 4347919 - 4348524 | 23570.1 |
| hypothetical protein | CPT03_RS17970 | Not Available | Positive | 4348539 - 4348814 | 10782.2 |
| peroxiredoxin family protein | CPT03_RS17975 | Not Available | Negative | 4348879 - 4349595 | 26193.2 |
| spondin domain-containing protein | CPT03_RS17980 | Not Available | Positive | 4349594 - 4351066 | 52267.4 |
| doxx family protein | CPT03_RS23000 | Not Available | Positive | 4351078 - 4351398 | 11768.7 |
| duf417 family protein | CPT03_RS17990 | Not Available | Positive | 4351603 - 4352052 | 16408.3 |
| hypothetical protein | CPT03_RS17995 | Not Available | Positive | 4352264 - 4352524 | 10004.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

