Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyruvate dehydrogenase complex e1 component subunit beta | CPT03_RS17845 | Not Available | Negative | 4314741 - 4315727 | 35865.5 |
| pd-(d/e)xk nuclease family protein | CPT03_RS17850 | Not Available | Negative | 4315858 - 4318731 | 110274.0 |
| uvrd-helicase domain-containing protein | CPT03_RS17855 | Not Available | Negative | 4318731 - 4322033 | 125364.0 |
| thioredoxin family protein | CPT03_RS17860 | Not Available | Positive | 4322164 - 4322703 | 19907.8 |
| glycoside hydrolase family 3 protein | CPT03_RS17865 | Not Available | Negative | 4322704 - 4324410 | 63370.2 |
| porin family protein | CPT03_RS17870 | Not Available | Negative | 4324664 - 4325296 | 22342.8 |
| porin family protein | CPT03_RS17875 | Not Available | Negative | 4325565 - 4326179 | 22078.6 |
| glycerol kinase glpk | CPT03_RS17880 | Not Available | Positive | 4326493 - 4327983 | 54049.4 |
| mip/aquaporin family protein | CPT03_RS17885 | Not Available | Positive | 4328016 - 4328747 | 25288.2 |
| serine hydrolase domain-containing protein | CPT03_RS17890 | Not Available | Negative | 4328959 - 4330476 | 56624.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

