Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dead/deah box helicase | CPT03_RS17690 | Not Available | Positive | 4281739 - 4284633 | 111915.0 |
| leucyl/phenylalanyl-trna--protein transferase | CPT03_RS17695 | Not Available | Negative | 4284630 - 4285262 | 23530.3 |
| yccf domain-containing protein | CPT03_RS17700 | Not Available | Positive | 4285331 - 4285699 | 13414.2 |
| app1 family protein | CPT03_RS17705 | Not Available | Negative | 4285696 - 4286673 | 37681.6 |
| diacylglycerol/lipid kinase family protein | CPT03_RS17710 | Not Available | Positive | 4286728 - 4287603 | 32104.3 |
| tonb family protein | CPT03_RS17715 | Not Available | Negative | 4287600 - 4288160 | 21187.4 |
| 30s ribosome-binding factor rbfa | CPT03_RS17720 | Not Available | Negative | 4288267 - 4288644 | 14264.9 |
| gtpase hflx | CPT03_RS17725 | Not Available | Negative | 4288676 - 4289866 | 45553.9 |
| indole-3-glycerol phosphate synthase trpc | CPT03_RS17730 | Not Available | Negative | 4289889 - 4290680 | 28987.8 |
| anthranilate synthase component ii | CPT03_RS17735 | Not Available | Negative | 4290683 - 4291255 | 21228.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

