Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | CPT03_RS01710 | Not Available | Positive | 434802 - 435986 | 43896.2 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS01715 | Not Available | Positive | 436293 - 437366 | 38261.9 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS01720 | Not Available | Positive | 437387 - 439588 | 82726.4 |
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS01725 | Not Available | Positive | 439600 - 441090 | 56062.0 |
| alpha/beta hydrolase family protein | CPT03_RS01730 | Not Available | Positive | 441114 - 443852 | 104124.0 |
| thioredoxin family protein | CPT03_RS01735 | Not Available | Positive | 443882 - 445168 | 49405.3 |
| helix-turn-helix domain-containing protein | CPT03_RS01740 | Not Available | Positive | 445170 - 445562 | 15498.9 |
| voc family protein | CPT03_RS01745 | Not Available | Negative | 445933 - 446361 | 15921.7 |
| hypothetical protein | CPT03_RS01750 | Not Available | Positive | 446595 - 446777 | 6787.29 |
| had family hydrolase | CPT03_RS01755 | Not Available | Negative | 446781 - 447443 | 24706.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

