Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-fucose:h+ symporter permease | CPT03_RS17090 | Not Available | Negative | 4154862 - 4156112 | 44966.4 |
| hypothetical protein | CPT03_RS17095 | Not Available | Negative | 4156231 - 4156569 | 12557.2 |
| alpha-l-fucosidase | CPT03_RS17100 | Not Available | Negative | 4156752 - 4158368 | 60313.4 |
| pdz domain-containing protein | CPT03_RS17105 | Not Available | Negative | 4158371 - 4160728 | 88066.6 |
| helix-turn-helix domain-containing protein | CPT03_RS17110 | Not Available | Negative | 4161114 - 4161374 | 10004.0 |
| sigma factor-like helix-turn-helix dna-binding protein | CPT03_RS17115 | Not Available | Positive | 4161750 - 4162556 | 32042.1 |
| hypothetical protein | CPT03_RS17120 | Not Available | Positive | 4162556 - 4163653 | 42741.0 |
| hypothetical protein | CPT03_RS17125 | Not Available | Negative | 4164090 - 4164949 | 31405.5 |
| duf3109 family protein | CPT03_RS17130 | Not Available | Negative | 4164992 - 4165567 | 21583.7 |
| duf3108 domain-containing protein | CPT03_RS17135 | Not Available | Negative | 4165574 - 4166350 | 29541.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

