Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | CPT03_RS16400 | Not Available | Negative | 3996645 - 3997637 | 38590.3 |
| duf4249 family protein | CPT03_RS16405 | Not Available | Negative | 3997634 - 3998428 | 29158.5 |
| tonb-dependent receptor | CPT03_RS16410 | Not Available | Negative | 3998419 - 4001205 | 103039.0 |
| abc transporter permease | CPT03_RS16415 | Not Available | Negative | 4001323 - 4002543 | 43542.6 |
| abc transporter atp-binding protein | CPT03_RS16420 | Not Available | Negative | 4002553 - 4003299 | 27548.2 |
| efflux rnd transporter periplasmic adaptor subunit | CPT03_RS16425 | Not Available | Negative | 4003296 - 4004558 | 45436.5 |
| tolc family protein | CPT03_RS16430 | Not Available | Negative | 4004562 - 4005896 | 49449.8 |
| sensor histidine kinase | CPT03_RS16435 | Not Available | Positive | 4006081 - 4007172 | 41414.2 |
| lytr/algr family response regulator transcription factor | CPT03_RS16440 | Not Available | Positive | 4007147 - 4007872 | 27305.4 |
| atp-binding protein | CPT03_RS16445 | Not Available | Negative | 4007927 - 4009258 | 51196.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

