Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ph domain-containing protein | CPT03_RS01605 | Not Available | Negative | 412098 - 413633 | 58373.7 |
| ph domain-containing protein | CPT03_RS01610 | Not Available | Negative | 413633 - 414148 | 18979.4 |
| dipeptidase | CPT03_RS01615 | Not Available | Positive | 414526 - 415896 | 50420.2 |
| glycoside hydrolase family 25 protein | CPT03_RS01620 | Not Available | Positive | 416102 - 417004 | 35237.6 |
| rna polymerase sigma-70 factor | CPT03_RS01625 | Not Available | Positive | 417120 - 417653 | 20565.9 |
| fecr family protein | CPT03_RS01630 | Not Available | Positive | 417733 - 418806 | 40815.1 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS01635 | Not Available | Positive | 418999 - 421929 | 107154.0 |
| hypothetical protein | CPT03_RS01640 | Not Available | Positive | 421893 - 422360 | 17461.6 |
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS01645 | Not Available | Positive | 422366 - 423847 | 55470.4 |
| gnat family n-acetyltransferase | CPT03_RS01650 | Not Available | Positive | 424076 - 424498 | 16166.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

