Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna pseudouridine(2604) synthase rluf | CPT03_RS16355 | Not Available | Positive | 3983791 - 3984843 | 38028.8 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | CPT03_RS16360 | Not Available | Positive | 3984948 - 3985997 | 39832.7 |
| hypothetical protein | CPT03_RS16365 | Not Available | Positive | 3986201 - 3987580 | 50224.7 |
| pas domain s-box protein | CPT03_RS16370 | Not Available | Negative | 3987836 - 3990601 | 103528.0 |
| serine hydroxymethyltransferase | CPT03_RS16375 | Not Available | Negative | 3990621 - 3991892 | 46136.9 |
| 1-deoxy-d-xylulose-5-phosphate synthase | CPT03_RS16380 | Not Available | Positive | 3991986 - 3993914 | 70446.7 |
| helix-turn-helix domain-containing protein | CPT03_RS16385 | Not Available | Positive | 3993914 - 3994897 | 37578.3 |
| hypothetical protein | CPT03_RS22835 | Not Available | Positive | 3995035 - 3995232 | 7510.16 |
| duf4397 domain-containing protein | CPT03_RS16390 | Not Available | Negative | 3995238 - 3995918 | 24351.8 |
| lytr/algr family response regulator transcription factor | CPT03_RS16395 | Not Available | Negative | 3995937 - 3996644 | 26704.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

