Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| murein hydrolase activator envc family protein | CPT03_RS16305 | Not Available | Negative | 3974457 - 3975731 | 48043.7 |
| duf4292 domain-containing protein | CPT03_RS16310 | Not Available | Negative | 3975752 - 3976534 | 29482.8 |
| tetratricopeptide repeat protein | CPT03_RS16315 | Not Available | Negative | 3976512 - 3977885 | 51348.9 |
| dutp diphosphatase | CPT03_RS16320 | Not Available | Negative | 3977889 - 3978320 | 15568.7 |
| lipopolysaccharide biosynthesis protein | CPT03_RS16325 | Not Available | Negative | 3978317 - 3979789 | 55379.2 |
| acylphosphatase | CPT03_RS16330 | Not Available | Negative | 3979791 - 3980072 | 10680.6 |
| nad(p)h-dependent flavin oxidoreductase | CPT03_RS16335 | Not Available | Negative | 3980110 - 3981051 | 33038.6 |
| amidohydrolase family protein | CPT03_RS16340 | Not Available | Negative | 3981087 - 3982265 | 43752.6 |
| helix-turn-helix transcriptional regulator | CPT03_RS16345 | Not Available | Positive | 3982363 - 3983052 | 26593.3 |
| dinb family protein | CPT03_RS16350 | Not Available | Positive | 3983140 - 3983637 | 19049.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

