Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome small subunit-dependent gtpase a | CPT03_RS16105 | Not Available | Positive | 3922278 - 3923198 | 34077.6 |
| d-aminoacyl-trna deacylase | CPT03_RS16110 | Not Available | Positive | 3923204 - 3923656 | 16379.9 |
| glycosyltransferase family 39 protein | CPT03_RS16115 | Not Available | Positive | 3923720 - 3925249 | 58562.4 |
| nucleotide pyrophosphohydrolase | CPT03_RS16120 | Not Available | Positive | 3925251 - 3925577 | 12306.7 |
| hit family protein | CPT03_RS16125 | Not Available | Negative | 3925647 - 3926048 | 14665.0 |
| transcription elongation factor grea | CPT03_RS16130 | Not Available | Negative | 3926060 - 3926533 | 17153.6 |
| m1 family metallopeptidase | CPT03_RS16135 | Not Available | Positive | 3926724 - 3928601 | 71148.3 |
| 2-hydroxyacid dehydrogenase | CPT03_RS16140 | Not Available | Negative | 3928596 - 3929522 | 34112.1 |
| 16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsma | CPT03_RS16145 | Not Available | Negative | 3929543 - 3930325 | 29481.8 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | CPT03_RS16150 | Not Available | Positive | 3930427 - 3931506 | 38981.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

