Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ompa family protein | CPT03_RS15910 | Not Available | Negative | 3859434 - 3861428 | 74981.2 |
| porp/sprf family type ix secretion system membrane protein | CPT03_RS15915 | Not Available | Negative | 3861506 - 3862501 | 35867.2 |
| gliding motility-associated c-terminal domain-containing protein | CPT03_RS15920 | Not Available | Negative | 3862559 - 3867211 | 159478.0 |
| putative ig domain-containing protein | CPT03_RS15925 | Not Available | Negative | 3867202 - 3878202 | 371764.0 |
| hypothetical protein | CPT03_RS15930 | Not Available | Positive | 3878453 - 3880987 | 99558.1 |
| s8 family peptidase | CPT03_RS15935 | Not Available | Negative | 3881034 - 3882635 | 58102.2 |
| rrf2 family transcriptional regulator | CPT03_RS15940 | Not Available | Negative | 3882776 - 3883213 | 16125.7 |
| gbsr/marr family transcriptional regulator | CPT03_RS15945 | Not Available | Negative | 3883374 - 3883880 | 19744.8 |
| sigma-54-dependent transcriptional regulator | CPT03_RS15950 | Not Available | Positive | 3884094 - 3885422 | 49370.9 |
| hybrid sensor histidine kinase/response regulator | CPT03_RS15955 | Not Available | Negative | 3885407 - 3887887 | 93840.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

