Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadph-dependent fmn reductase | CPT03_RS15515 | Not Available | Negative | 3764718 - 3765161 | 16283.6 |
| pirin family protein | CPT03_RS15520 | Not Available | Negative | 3765171 - 3766061 | 33759.3 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | CPT03_RS15525 | Not Available | Negative | 3766228 - 3767826 | 58965.2 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS15530 | Not Available | Negative | 3767847 - 3771014 | 113814.0 |
| fecr family protein | CPT03_RS15535 | Not Available | Negative | 3771307 - 3772377 | 40748.2 |
| rna polymerase sigma factor | CPT03_RS15540 | Not Available | Negative | 3772494 - 3773048 | 21796.3 |
| laci family dna-binding transcriptional regulator | CPT03_RS15545 | Not Available | Negative | 3773109 - 3774119 | 38087.8 |
| sodium/sugar symporter | CPT03_RS15550 | Not Available | Positive | 3774329 - 3775957 | 59607.2 |
| inositol oxygenase family protein | CPT03_RS15555 | Not Available | Positive | 3775995 - 3776867 | 34354.1 |
| hypothetical protein | CPT03_RS15560 | Not Available | Positive | 3777021 - 3779846 | 105289.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

