Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | CPT03_RS15420 | Not Available | Positive | 3742216 - 3742491 | 10630.6 |
| fic family protein | CPT03_RS15425 | Not Available | Positive | 3742765 - 3743886 | 42812.9 |
| adenosylhomocysteinase | CPT03_RS15430 | Not Available | Positive | 3744088 - 3745404 | 48223.7 |
| polysaccharide deacetylase family protein | CPT03_RS15435 | Not Available | Negative | 3745476 - 3746450 | 36398.0 |
| mechanosensitive ion channel family protein | CPT03_RS15440 | Not Available | Negative | 3746453 - 3748021 | 58479.9 |
| pyridoxine 5'-phosphate synthase | CPT03_RS15445 | Not Available | Positive | 3748097 - 3748816 | 26763.9 |
| hypothetical protein | CPT03_RS15450 | Not Available | Positive | 3748834 - 3749403 | 21480.3 |
| aminomethyl-transferring glycine dehydrogenase | CPT03_RS15455 | Not Available | Positive | 3749452 - 3752328 | 104934.0 |
| ycei family protein | CPT03_RS15460 | Not Available | Positive | 3752440 - 3753033 | 21338.9 |
| response regulator | CPT03_RS15465 | Not Available | Positive | 3753162 - 3753566 | 15439.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

