Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lptf/lptg family permease | CPT03_RS01510 | Not Available | Negative | 392957 - 394060 | 42113.6 |
| trna guanosine(34) transglycosylase tgt | CPT03_RS01515 | Not Available | Negative | 394061 - 395191 | 42417.2 |
| glycosyltransferase | CPT03_RS01520 | Not Available | Positive | 395364 - 396485 | 42708.8 |
| 16s rrna (guanine(527)-n(7))-methyltransferase rsmg | CPT03_RS01525 | Not Available | Positive | 396476 - 397108 | 24067.0 |
| m56 family metallopeptidase | CPT03_RS01530 | Not Available | Negative | 397112 - 398536 | 53713.0 |
| blai/meci/copy family transcriptional regulator | CPT03_RS01535 | Not Available | Negative | 398533 - 398868 | 12941.8 |
| dna-processing protein dpra | CPT03_RS01540 | Not Available | Positive | 399047 - 400138 | 40229.2 |
| pyridoxal-phosphate dependent enzyme | CPT03_RS01545 | Not Available | Positive | 400310 - 401671 | 50091.2 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | CPT03_RS01550 | Not Available | Negative | 401740 - 403065 | 48167.1 |
| duf4290 domain-containing protein | CPT03_RS01555 | Not Available | Negative | 403104 - 403766 | 25758.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

