Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | CPT03_RS15320 | Not Available | Positive | 3718235 - 3719641 | 50958.7 |
| beta-n-acetylhexosaminidase | CPT03_RS15325 | Not Available | Positive | 3719662 - 3721623 | 74176.9 |
| trna pseudouridine synthase a | CPT03_RS15330 | Not Available | Positive | 3721628 - 3722437 | 31103.7 |
| doxx family protein | CPT03_RS15335 | Not Available | Positive | 3722525 - 3722980 | 16601.0 |
| m28 family peptidase | CPT03_RS15340 | Not Available | Positive | 3723008 - 3724717 | 63536.5 |
| shikimate kinase | CPT03_RS15345 | Not Available | Negative | 3724709 - 3725206 | 18445.3 |
| abc transporter permease | CPT03_RS15350 | Not Available | Negative | 3725209 - 3726264 | 39329.5 |
| bt_3928 family protein | CPT03_RS15355 | Not Available | Negative | 3726267 - 3727418 | 43366.2 |
| duf1599 domain-containing protein | CPT03_RS15360 | Not Available | Negative | 3727429 - 3727971 | 20472.8 |
| dihydropteroate synthase | CPT03_RS15365 | Not Available | Positive | 3728065 - 3728922 | 31446.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

