Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| translocation/assembly module tamb domain-containing protein | CPT03_RS14920 | Not Available | Positive | 3626986 - 3631203 | 156957.0 |
| bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase ii | CPT03_RS14925 | Not Available | Negative | 3631227 - 3632438 | 44203.2 |
| lptf/lptg family permease | CPT03_RS14930 | Not Available | Negative | 3632567 - 3634003 | 54432.2 |
| start-like domain-containing protein | CPT03_RS14935 | Not Available | Negative | 3634034 - 3634414 | 14882.4 |
| Trna-met | Not Available | Not Available | Positive | 3634540 - 3634613 | Not Available |
| is1182 family transposase | CPT03_RS14945 | Not Available | Positive | 3634776 - 3636311 | 59178.9 |
| methylated-dna--[protein]-cysteine s-methyltransferase | CPT03_RS14950 | Not Available | Positive | 3636619 - 3637239 | 23310.8 |
| s8 family peptidase | CPT03_RS14955 | Not Available | Negative | 3637231 - 3639000 | 65714.9 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 3639217 - 3639328 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 3639436 - 3642312 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

