Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydroxymethylglutaryl-coa lyase | CPT03_RS01460 | Not Available | Negative | 380353 - 381222 | 32434.9 |
| nad(p)/fad-dependent oxidoreductase | CPT03_RS01465 | Not Available | Negative | 381200 - 382549 | 49645.4 |
| protein translocase subunit secdf | CPT03_RS01470 | Not Available | Negative | 382633 - 385599 | 107773.0 |
| dihydrofolate reductase | CPT03_RS01475 | Not Available | Negative | 385732 - 386217 | 18127.6 |
| thymidylate synthase | CPT03_RS01480 | Not Available | Negative | 386214 - 387008 | 30292.3 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | CPT03_RS01485 | Not Available | Positive | 387325 - 388128 | 29519.4 |
| osmc family protein | CPT03_RS01490 | Not Available | Positive | 388171 - 388587 | 15482.8 |
| lapa family protein | CPT03_RS01495 | Not Available | Negative | 388646 - 388924 | 10559.0 |
| tolb family protein | CPT03_RS01500 | Not Available | Negative | 388928 - 391738 | 107448.0 |
| dmt family transporter | CPT03_RS01505 | Not Available | Negative | 392197 - 392991 | 29559.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

