Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| energy-dependent translational throttle protein etta | CPT03_RS00110 | Not Available | Negative | 22558 - 24234 | 62714.7 |
| atp-dependent clp protease atp-binding subunit | CPT03_RS00120 | Not Available | Positive | 24959 - 27499 | 94692.5 |
| group ii intron reverse transcriptase/maturase | CPT03_RS00125 | Not Available | Positive | 28134 - 29408 | 48931.7 |
| formylglycine-generating enzyme family protein | CPT03_RS00130 | Not Available | Positive | 29642 - 30610 | 36480.1 |
| gfo/idh/moca family protein | CPT03_RS00135 | Not Available | Positive | 30653 - 31978 | 49087.1 |
| fad:protein fmn transferase | CPT03_RS00140 | Not Available | Positive | 31993 - 33003 | 37182.3 |
| hydroxypyruvate isomerase family protein | CPT03_RS00145 | Not Available | Positive | 33043 - 33981 | 34888.7 |
| pa0069 family radical sam protein | CPT03_RS00150 | Not Available | Negative | 33983 - 35056 | 40678.2 |
| carboxypeptidase-like regulatory domain-containing protein | CPT03_RS00155 | Not Available | Negative | 35102 - 36337 | 47527.2 |
| enoyl-acp reductase | CPT03_RS00160 | Not Available | Negative | 36356 - 37171 | 29672.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

