Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cation:proton antiporter | CPT03_RS14870 | Not Available | Positive | 3615490 - 3617712 | 81546.3 |
| duf2157 domain-containing protein | CPT03_RS14875 | Not Available | Positive | 3617759 - 3618796 | 40367.4 |
| lyse family transporter | CPT03_RS14880 | Not Available | Negative | 3618802 - 3619383 | 21883.3 |
| excinuclease abc subunit uvra | CPT03_RS14885 | Not Available | Negative | 3619437 - 3622238 | 104172.0 |
| rna polymerase sigma factor | CPT03_RS14890 | Not Available | Positive | 3622510 - 3623085 | 22576.4 |
| hypothetical protein | CPT03_RS14895 | Not Available | Positive | 3623185 - 3623376 | 7239.55 |
| endonuclease iii | CPT03_RS14900 | Not Available | Positive | 3623579 - 3624259 | 25563.0 |
| recombinase reca | CPT03_RS14905 | Not Available | Positive | 3624378 - 3625391 | 36155.6 |
| hypothetical protein | CPT03_RS14910 | Not Available | Negative | 3625460 - 3625684 | 8402.92 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsad | CPT03_RS14915 | Not Available | Negative | 3625703 - 3626704 | 36197.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

