Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5'/3'-nucleotidase sure | CPT03_RS14665 | Not Available | Negative | 3568417 - 3569196 | 28456.0 |
| m16 family metallopeptidase | CPT03_RS14670 | Not Available | Positive | 3569434 - 3572367 | 110165.0 |
| csbd family protein | CPT03_RS14675 | Not Available | Negative | 3572602 - 3572787 | 7086.46 |
| acetate--coa ligase | CPT03_RS14680 | Not Available | Negative | 3572855 - 3574747 | 70338.3 |
| transposase | CPT03_RS14685 | Not Available | Negative | 3574972 - 3576315 | 51014.2 |
| 50s ribosomal protein l28 | CPT03_RS14690 | Not Available | Positive | 3576782 - 3577015 | 8918.04 |
| 50s ribosomal protein l33 | CPT03_RS14695 | Not Available | Positive | 3577056 - 3577238 | 6936.6 |
| duf4295 domain-containing protein | CPT03_RS14700 | Not Available | Positive | 3577277 - 3577438 | 5767.06 |
| signal recognition particle-docking protein ftsy | CPT03_RS14705 | Not Available | Positive | 3577511 - 3578473 | 34698.9 |
| 30s ribosomal protein s12 methylthiotransferase rimo | CPT03_RS14710 | Not Available | Positive | 3578519 - 3579853 | 50383.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

