Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator transcription factor | CPT03_RS14360 | Not Available | Negative | 3482863 - 3483225 | 13773.5 |
| duf3887 domain-containing protein | CPT03_RS14365 | Not Available | Negative | 3483326 - 3484645 | 48372.0 |
| response regulator transcription factor | CPT03_RS14370 | Not Available | Positive | 3484803 - 3485486 | 25433.1 |
| hypothetical protein | CPT03_RS14375 | Not Available | Positive | 3485785 - 3486276 | 18782.9 |
| bestrophin family protein | CPT03_RS14380 | Not Available | Positive | 3486306 - 3487235 | 35713.8 |
| family 78 glycoside hydrolase catalytic domain | CPT03_RS14385 | Not Available | Negative | 3487287 - 3489038 | 64998.2 |
| family 78 glycoside hydrolase catalytic domain | CPT03_RS14390 | Not Available | Negative | 3489061 - 3491877 | 105764.0 |
| hypothetical protein | CPT03_RS14395 | Not Available | Negative | 3491947 - 3493731 | 68109.4 |
| glycoside hydrolase family 99-like domain-containing protein | CPT03_RS14400 | Not Available | Negative | 3493746 - 3494936 | 46017.7 |
| glycosyl hydrolase | CPT03_RS14405 | Not Available | Negative | 3494946 - 3498218 | 121644.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

