Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor plug domain-containing protein | CPT03_RS14260 | Not Available | Negative | 3452051 - 3454144 | 77127.1 |
| hypothetical protein | CPT03_RS14265 | Not Available | Positive | 3454321 - 3455364 | 39001.7 |
| duf6702 family protein | CPT03_RS14270 | Not Available | Negative | 3455423 - 3455899 | 18751.5 |
| hupe/urej family protein | CPT03_RS14275 | Not Available | Positive | 3455970 - 3456557 | 21964.8 |
| m1 family metallopeptidase | CPT03_RS14280 | Not Available | Positive | 3456562 - 3458877 | 89332.3 |
| tail fiber domain-containing protein | CPT03_RS14285 | Not Available | Negative | 3458931 - 3459368 | 16334.8 |
| hypothetical protein | CPT03_RS14290 | Not Available | Negative | 3459421 - 3459720 | 11374.8 |
| dna gyrase/topoisomerase iv subunit a | CPT03_RS14295 | Not Available | Negative | 3459857 - 3462796 | 110229.0 |
| cytidine deaminase | CPT03_RS14300 | Not Available | Negative | 3462945 - 3463433 | 17898.6 |
| translocation/assembly module tamb domain-containing protein | CPT03_RS14305 | Not Available | Positive | 3463604 - 3468715 | 189195.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

