Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dead/deah box helicase | CPT03_RS13850 | Not Available | Negative | 3354744 - 3357752 | 114833.0 |
| type ii toxin-antitoxin system vapc family toxin | CPT03_RS13855 | Not Available | Negative | 3357804 - 3358172 | 14205.0 |
| hypothetical protein | CPT03_RS13860 | Not Available | Negative | 3358175 - 3358405 | 8662.34 |
| Trna-arg | Not Available | Not Available | Positive | 3358623 - 3358699 | Not Available |
| redoxin domain-containing protein | CPT03_RS13875 | Not Available | Negative | 3358811 - 3359275 | 17219.4 |
| sdr family oxidoreductase | CPT03_RS13880 | Not Available | Negative | 3359360 - 3360268 | 33605.4 |
| f0f1 atp synthase subunit beta | CPT03_RS13885 | Not Available | Positive | 3360509 - 3362011 | 54146.9 |
| atp synthase f1 subunit epsilon | CPT03_RS13890 | Not Available | Positive | 3362130 - 3362372 | 8462.43 |
| branched-chain amino acid transaminase | CPT03_RS13895 | Not Available | Positive | 3363013 - 3363903 | 33411.2 |
| dihydroxy-acid dehydratase | CPT03_RS13900 | Not Available | Positive | 3363943 - 3365640 | 59955.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

