Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CPT03_RS13640 | Not Available | Positive | 3311776 - 3312756 | 38081.3 |
| phytanoyl-coa dioxygenase family protein | CPT03_RS13645 | Not Available | Positive | 3312757 - 3313713 | 37420.4 |
| duf1015 family protein | CPT03_RS13650 | Not Available | Negative | 3314211 - 3315368 | 44605.6 |
| rna polymerase sigma factor rpod/siga | CPT03_RS13655 | Not Available | Negative | 3315391 - 3316254 | 32900.0 |
| 3-phosphoserine/phosphohydroxythreonine transaminase | CPT03_RS13660 | Not Available | Negative | 3316251 - 3317390 | 42239.0 |
| lrp/asnc family transcriptional regulator | CPT03_RS13665 | Not Available | Positive | 3317721 - 3318191 | 17966.3 |
| tlpa disulfide reductase family protein | CPT03_RS13670 | Not Available | Positive | 3318507 - 3319628 | 42564.3 |
| isl3 family transposase | CPT03_RS13675 | Not Available | Negative | 3319735 - 3321318 | 60343.7 |
| helix-turn-helix domain-containing protein | CPT03_RS13680 | Not Available | Positive | 3321389 - 3321856 | 17628.4 |
| hypothetical protein | CPT03_RS13685 | Not Available | Negative | 3321895 - 3322380 | 18037.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

