Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cellulase family glycosylhydrolase | CPT03_RS01315 | Not Available | Positive | 344022 - 345785 | 67503.2 |
| multiheme c-type cytochrome | CPT03_RS01320 | Not Available | Positive | 345806 - 346972 | 43414.8 |
| rna polymerase sigma factor | CPT03_RS01325 | Not Available | Positive | 347035 - 347616 | 22933.9 |
| fecr family protein | CPT03_RS01330 | Not Available | Positive | 347689 - 348744 | 39477.1 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS01335 | Not Available | Positive | 348909 - 352472 | 130131.0 |
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS01340 | Not Available | Positive | 352493 - 354283 | 66048.0 |
| acyltransferase family protein | CPT03_RS01345 | Not Available | Positive | 354304 - 355035 | 26818.1 |
| family 20 glycosylhydrolase | CPT03_RS01350 | Not Available | Positive | 355437 - 357965 | 94510.1 |
| duf1549 domain-containing protein | CPT03_RS01355 | Not Available | Positive | 358113 - 360479 | 88793.7 |
| duf1501 domain-containing protein | CPT03_RS01360 | Not Available | Positive | 360517 - 361935 | 52549.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

