Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | CPT03_RS13255 | Not Available | Negative | 3207947 - 3211369 | 125376.0 |
| fecr family protein | CPT03_RS13260 | Not Available | Negative | 3211595 - 3212773 | 43087.7 |
| rna polymerase sigma factor | CPT03_RS13265 | Not Available | Negative | 3212834 - 3213421 | 22784.7 |
| glycoside hydrolase family 2 tim barrel-domain containing protein | CPT03_RS13270 | Not Available | Negative | 3213510 - 3214610 | 42356.6 |
| phytanoyl-coa dioxygenase family protein | CPT03_RS13275 | Not Available | Negative | 3214635 - 3215450 | 31119.8 |
| arac family transcriptional regulator | CPT03_RS13280 | Not Available | Positive | 3215605 - 3216468 | 33392.0 |
| hypothetical protein | CPT03_RS22975 | Not Available | Negative | 3216465 - 3217571 | 41591.0 |
| gxgyxyp domain-containing protein | CPT03_RS22980 | Not Available | Negative | 3217493 - 3218296 | 30390.3 |
| carboxymuconolactone decarboxylase family protein | CPT03_RS13290 | Not Available | Negative | 3218436 - 3218906 | 17749.2 |
| calcium:proton antiporter | CPT03_RS13295 | Not Available | Positive | 3219028 - 3220110 | 37841.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

