Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | CPT03_RS12700 | Not Available | Positive | 3077780 - 3078481 | 25066.5 |
| c40 family peptidase | CPT03_RS12705 | Not Available | Positive | 3078544 - 3079086 | 19953.0 |
| flavin reductase family protein | CPT03_RS12710 | Not Available | Negative | 3079081 - 3079968 | 32652.5 |
| fumarylacetoacetate hydrolase family protein | CPT03_RS12715 | Not Available | Negative | 3080036 - 3081031 | 36485.6 |
| homogentisate 1,2-dioxygenase | CPT03_RS12720 | Not Available | Positive | 3081320 - 3082486 | 44704.0 |
| 4-hydroxyphenylpyruvate dioxygenase | CPT03_RS12725 | Not Available | Positive | 3082617 - 3083747 | 42427.1 |
| yihy/virulence factor brkb family protein | CPT03_RS12730 | Not Available | Positive | 3083853 - 3084773 | 34802.8 |
| hypothetical protein | CPT03_RS12735 | Not Available | Negative | 3084770 - 3085051 | 10659.9 |
| porin family protein | CPT03_RS12740 | Not Available | Negative | 3085166 - 3085753 | 20818.0 |
| histidine kinase n-terminal 7tm domain-containing protein | CPT03_RS12745 | Not Available | Positive | 3085905 - 3087677 | 67549.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

