Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine--trna ligase | CPT03_RS12650 | Not Available | Positive | 3061567 - 3063048 | 57422.4 |
| pqq-binding-like beta-propeller repeat protein | CPT03_RS12655 | Not Available | Negative | 3063132 - 3065510 | 87862.5 |
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS12660 | Not Available | Negative | 3065589 - 3067388 | 67212.0 |
| tonb-dependent receptor | CPT03_RS12665 | Not Available | Negative | 3067406 - 3070843 | 127701.0 |
| fecr family protein | CPT03_RS12670 | Not Available | Negative | 3070974 - 3071891 | 34296.2 |
| rna polymerase sigma-70 factor | CPT03_RS12675 | Not Available | Negative | 3071946 - 3072488 | 20954.5 |
| cap domain-containing protein | CPT03_RS12680 | Not Available | Positive | 3072689 - 3073393 | 26931.1 |
| lta synthase family protein | CPT03_RS12685 | Not Available | Positive | 3073492 - 3075420 | 73757.2 |
| gtra family protein | CPT03_RS12690 | Not Available | Positive | 3075425 - 3075907 | 18470.1 |
| aromatic amino acid hydroxylase | CPT03_RS12695 | Not Available | Positive | 3075993 - 3077783 | 67644.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

