Pedobacter ginsengisoli strain T01R-27

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter ginsengisoli strain T01R-27 is a bacterial strain characterized by the presence of flagella, which suggests motility capabilities that may enhance its ecological adaptability. This strain contains a single replicon, indicating a streamlined genetic organization that may facilitate efficient replication and gene expression. The genomic information for Pedobacter ginsengisoli T01R-27 is accessible under the accession number NZ_CP024091.1, providing a valuable resource for further study and characterization. The presence of flagella in Pedobacter ginsengisoli T01R-27 may play a significant role in its ecological interactions, allowing for movement towards favorable environments or away from adverse conditions. This motility can be crucial for survival in diverse habitats, especially in soil environments where nutrient availability can fluctuate. Overall, understanding the traits of Pedobacter ginsengisoli strain T01R-27, particularly its motility and genetic structure, can provide insights into its ecological roles and potential applications in biotechnology or environmental microbiology. Further research into this strain could reveal its interactions within microbial communities and its contributions to soil health and nutrient cycling.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter ginsengisoli
Strainstrain T01R-27

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter ginsengisoli strain T01R-27 chromosome, complete

Gene Summary

Adenine Count

1674046 bp

Thymine Count

1667241 bp

Guanine Count

1014742 bp

Cytosine Count

1017331 bp

Genome Length

5373360 bp

Protein-coding Genes

4490 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCPT03_RS23105Not AvailablePositive3053474 - 30536567042.3
zinc dependent phospholipase c family proteinCPT03_RS23110Not AvailablePositive3053619 - 305397813944.6
deda family proteinCPT03_RS12610Not AvailableNegative3054241 - 305489724682.0
duf4397 domain-containing proteinCPT03_RS12615Not AvailableNegative3054979 - 305566224253.9
dna polymerase iii subunit betaCPT03_RS12620Not AvailableNegative3055751 - 305687541262.2
gliding motility-associated abc transporter substrate-binding protein gldgCPT03_RS12625Not AvailableNegative3056910 - 305859262673.1
gliding motility-associated abc transporter permease subunit gldfCPT03_RS12630Not AvailableNegative3058586 - 305931427111.9
outer membrane beta-barrel proteinCPT03_RS12635Not AvailableNegative3059319 - 305984018593.2
outer membrane beta-barrel proteinCPT03_RS12640Not AvailableNegative3060107 - 306063418301.9
atp-binding cassette domain-containing proteinCPT03_RS12645Not AvailableNegative3060754 - 306146126345.1

Displaying genes 2531 – 2540 of 4562 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.