Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dinb family protein | CPT03_RS01220 | Not Available | Positive | 315291 - 315812 | 19777.3 |
| alpha-ketoglutarate-dependent dioxygenase alkb family protein | CPT03_RS01225 | Not Available | Positive | 315830 - 316432 | 23567.2 |
| tetr/acrr family transcriptional regulator | CPT03_RS01230 | Not Available | Positive | 316560 - 317165 | 23089.0 |
| doxx family protein | CPT03_RS01235 | Not Available | Positive | 317215 - 317646 | 15738.9 |
| lea type 2 family protein | CPT03_RS01240 | Not Available | Positive | 317695 - 318294 | 21785.0 |
| pig-l family deacetylase | CPT03_RS01245 | Not Available | Positive | 318417 - 320855 | 89670.6 |
| sodium:solute symporter | CPT03_RS01250 | Not Available | Positive | 321013 - 322725 | 63375.3 |
| sialidase family protein | CPT03_RS01255 | Not Available | Positive | 322706 - 323767 | 39733.4 |
| duf2911 domain-containing protein | CPT03_RS01260 | Not Available | Negative | 323836 - 324684 | 30982.2 |
| m1 family metallopeptidase | CPT03_RS01265 | Not Available | Positive | 324797 - 327361 | 97879.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

