Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxypeptidase-like regulatory domain-containing protein | CPT03_RS12355 | Not Available | Negative | 3005694 - 3007181 | 56931.8 |
| fecr family protein | CPT03_RS12360 | Not Available | Negative | 3007182 - 3008327 | 42321.6 |
| rna polymerase sigma factor | CPT03_RS12365 | Not Available | Negative | 3008435 - 3009055 | 24168.3 |
| atp phosphoribosyltransferase | CPT03_RS12370 | Not Available | Positive | 3009438 - 3010289 | 30762.4 |
| histidinol dehydrogenase | CPT03_RS12375 | Not Available | Positive | 3010358 - 3011647 | 46534.8 |
| histidinol-phosphate transaminase | CPT03_RS12380 | Not Available | Positive | 3011732 - 3012772 | 38667.3 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | CPT03_RS12385 | Not Available | Positive | 3012772 - 3013905 | 42666.8 |
| imidazole glycerol phosphate synthase subunit hish | CPT03_RS12390 | Not Available | Positive | 3013905 - 3014498 | 21808.4 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | CPT03_RS12395 | Not Available | Positive | 3014500 - 3015249 | 28027.0 |
| imidazole glycerol phosphate synthase subunit hisf | CPT03_RS12400 | Not Available | Positive | 3015253 - 3016008 | 27014.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

