Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lytr/algr family response regulator transcription factor | CPT03_RS12200 | Not Available | Negative | 2961328 - 2961657 | 12502.4 |
| lytr/algr family response regulator transcription factor | CPT03_RS12210 | Not Available | Negative | 2962663 - 2962992 | 12619.6 |
| alpha-l-fucosidase | CPT03_RS12215 | Not Available | Negative | 2963102 - 2964727 | 61556.3 |
| endo-alpha-n-acetylgalactosaminidase family protein | CPT03_RS12220 | Not Available | Negative | 2964808 - 2968161 | 125832.0 |
| glycoside hydrolase family 27 protein | CPT03_RS12225 | Not Available | Negative | 2968215 - 2969471 | 46952.2 |
| metallophosphoesterase family protein | CPT03_RS12230 | Not Available | Negative | 2969517 - 2970422 | 34479.9 |
| glycoside hydrolase family 2 tim barrel-domain containing protein | CPT03_RS12235 | Not Available | Negative | 2970423 - 2973353 | 110279.0 |
| beta-galactosidase | CPT03_RS12240 | Not Available | Negative | 2973384 - 2975825 | 91464.7 |
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS12245 | Not Available | Negative | 2975953 - 2977752 | 67656.2 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS12250 | Not Available | Negative | 2977779 - 2981117 | 124271.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

