Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CPT03_RS23385 | Not Available | Positive | 2936156 - 2936326 | 6717.13 |
| site-specific integrase | CPT03_RS23100 | Not Available | Positive | 2936462 - 2937115 | 24600.8 |
| tyrosine-type recombinase/integrase | CPT03_RS12105 | Not Available | Positive | 2937108 - 2938112 | 38318.2 |
| tyrosine-type recombinase/integrase | CPT03_RS12110 | Not Available | Positive | 2938099 - 2939127 | 39785.1 |
| atp-binding protein | CPT03_RS12115 | Not Available | Negative | 2939063 - 2939617 | 21142.8 |
| recombinase family protein | CPT03_RS12120 | Not Available | Positive | 2939627 - 2940862 | 47813.8 |
| lipocalin family protein | CPT03_RS12125 | Not Available | Negative | 2941406 - 2941795 | 14337.2 |
| hypothetical protein | CPT03_RS12135 | Not Available | Negative | 2942450 - 2942833 | 14649.5 |
| duf5013 domain-containing protein | CPT03_RS12140 | Not Available | Negative | 2943025 - 2944062 | 38181.9 |
| duf1735 domain-containing protein | CPT03_RS12145 | Not Available | Negative | 2944137 - 2945171 | 37033.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

