Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS11955 | Not Available | Negative | 2901717 - 2903432 | 64203.8 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS11960 | Not Available | Negative | 2903443 - 2906886 | 128290.0 |
| fecr family protein | CPT03_RS11965 | Not Available | Negative | 2906924 - 2908069 | 42796.5 |
| rna polymerase sigma factor | CPT03_RS11970 | Not Available | Negative | 2908135 - 2908704 | 22206.7 |
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS11975 | Not Available | Negative | 2909000 - 2910754 | 64546.1 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS11980 | Not Available | Negative | 2910767 - 2914078 | 122091.0 |
| hypothetical protein | CPT03_RS11985 | Not Available | Positive | 2914307 - 2914918 | 22436.6 |
| abc-f family atp-binding cassette domain-containing protein | CPT03_RS11990 | Not Available | Negative | 2914987 - 2916621 | 61971.6 |
| hypothetical protein | CPT03_RS23085 | Not Available | Positive | 2917024 - 2917224 | 7272.82 |
| helix-turn-helix domain-containing protein | CPT03_RS12000 | Not Available | Negative | 2917326 - 2918138 | 31698.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

