Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| winged helix-turn-helix domain-containing protein | CPT03_RS11230 | Not Available | Negative | 2724320 - 2725210 | 33378.0 |
| nad-dependent epimerase/dehydratase family protein | CPT03_RS11235 | Not Available | Positive | 2725432 - 2726085 | 24476.9 |
| hypothetical protein | CPT03_RS11240 | Not Available | Negative | 2726130 - 2727469 | 49999.8 |
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS11245 | Not Available | Negative | 2727749 - 2729626 | 70442.2 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS11250 | Not Available | Negative | 2729651 - 2733160 | 129930.0 |
| fecr family protein | CPT03_RS11255 | Not Available | Negative | 2733266 - 2734333 | 41162.6 |
| rna polymerase sigma factor | CPT03_RS11260 | Not Available | Negative | 2734431 - 2734997 | 21829.7 |
| atp-binding protein | CPT03_RS11265 | Not Available | Negative | 2735060 - 2736868 | 67433.5 |
| sensor protein kdpd | CPT03_RS11270 | Not Available | Negative | 2736927 - 2738057 | 42878.4 |
| porin | CPT03_RS11275 | Not Available | Negative | 2738074 - 2739144 | 39295.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

