Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | CPT03_RS01070 | Not Available | Negative | 279420 - 282710 | 122033.0 |
| fecr family protein | CPT03_RS01075 | Not Available | Negative | 282762 - 283805 | 38937.1 |
| rna polymerase sigma factor | CPT03_RS01080 | Not Available | Negative | 283916 - 284470 | 21110.7 |
| magnesium transporter | CPT03_RS01085 | Not Available | Positive | 284922 - 286295 | 50758.5 |
| redox-regulated atpase ychf | CPT03_RS01090 | Not Available | Negative | 286461 - 287555 | 39992.9 |
| duf5362 family protein | CPT03_RS01095 | Not Available | Positive | 287657 - 288169 | 18767.8 |
| srpbcc family protein | CPT03_RS01100 | Not Available | Negative | 288185 - 288895 | 26881.7 |
| alpha-l-fucosidase | CPT03_RS01105 | Not Available | Positive | 289051 - 290490 | 53782.4 |
| efflux rnd transporter permease subunit | CPT03_RS01110 | Not Available | Negative | 290494 - 293631 | 116403.0 |
| efflux rnd transporter periplasmic adaptor subunit | CPT03_RS01115 | Not Available | Negative | 293649 - 294749 | 40585.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

