Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fe-s cluster assembly protein sufd | CPT03_RS10570 | Not Available | Positive | 2569385 - 2570686 | 48536.2 |
| cysteine desulfurase | CPT03_RS10575 | Not Available | Positive | 2570688 - 2571902 | 44432.5 |
| sufe family protein | CPT03_RS10580 | Not Available | Positive | 2571902 - 2572351 | 16921.5 |
| iron-sulfur cluster assembly protein | CPT03_RS10585 | Not Available | Positive | 2572363 - 2572677 | 11710.3 |
| rrf2 family transcriptional regulator | CPT03_RS10590 | Not Available | Positive | 2572690 - 2573163 | 17264.1 |
| pqq-dependent sugar dehydrogenase | CPT03_RS10595 | Not Available | Negative | 2573222 - 2575891 | 97760.5 |
| sugar phosphate isomerase/epimerase family protein | CPT03_RS10600 | Not Available | Negative | 2575922 - 2576803 | 32289.8 |
| ribonuclease hi | CPT03_RS10605 | Not Available | Negative | 2576965 - 2577429 | 17307.8 |
| Trna-his | Not Available | Not Available | Positive | 2577607 - 2577680 | Not Available |
| recombinase family protein | CPT03_RS10615 | Not Available | Negative | 2577735 - 2579201 | 56777.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

