Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5' nucleotidase, nt5c type | CPT03_RS10520 | Not Available | Negative | 2553213 - 2553752 | 20943.1 |
| deor/glpr family dna-binding transcription regulator | CPT03_RS10525 | Not Available | Positive | 2553847 - 2554596 | 27566.3 |
| tonb-dependent receptor | CPT03_RS10530 | Not Available | Negative | 2554589 - 2557318 | 100614.0 |
| hypothetical protein | CPT03_RS10535 | Not Available | Negative | 2557406 - 2562985 | 208037.0 |
| choice-of-anchor i family protein | CPT03_RS10540 | Not Available | Positive | 2563139 - 2564668 | 54744.3 |
| duf1772 domain-containing protein | CPT03_RS10545 | Not Available | Negative | 2564681 - 2565211 | 19093.6 |
| sdr family oxidoreductase | CPT03_RS10550 | Not Available | Negative | 2565218 - 2566069 | 31058.2 |
| helix-turn-helix domain-containing protein | CPT03_RS10555 | Not Available | Negative | 2566143 - 2566961 | 30992.7 |
| fe-s cluster assembly protein sufb | CPT03_RS10560 | Not Available | Positive | 2567133 - 2568578 | 53790.9 |
| fe-s cluster assembly atpase sufc | CPT03_RS10565 | Not Available | Positive | 2568597 - 2569358 | 28184.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

