Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | CPT03_RS10470 | Not Available | Negative | 2542348 - 2543118 | 27638.2 |
| duf4861 family protein | CPT03_RS10475 | Not Available | Negative | 2543129 - 2544268 | 42424.8 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | CPT03_RS10480 | Not Available | Negative | 2544279 - 2545121 | 31624.6 |
| glycoside hydrolase family 88 protein | CPT03_RS10485 | Not Available | Negative | 2545144 - 2546337 | 45315.3 |
| laci family dna-binding transcriptional regulator | CPT03_RS10490 | Not Available | Negative | 2546362 - 2547396 | 38323.4 |
| (fe-s)-binding protein | CPT03_RS10495 | Not Available | Positive | 2547742 - 2548482 | 27191.1 |
| lactate utilization protein b | CPT03_RS10500 | Not Available | Positive | 2548504 - 2549883 | 51742.9 |
| lutc/ykgg family protein | CPT03_RS10505 | Not Available | Positive | 2549876 - 2550460 | 21111.3 |
| glucuronate isomerase | CPT03_RS10510 | Not Available | Negative | 2550475 - 2551884 | 53264.6 |
| mannonate dehydratase | CPT03_RS10515 | Not Available | Negative | 2551894 - 2553078 | 44362.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

